Expression analysis of cellulose synthases that comprise the Type II complex in hybrid aspen.
Identifieur interne : 000968 ( Main/Exploration ); précédent : 000967; suivant : 000969Expression analysis of cellulose synthases that comprise the Type II complex in hybrid aspen.
Auteurs : Y. Osako [Japon] ; N. Takata [Japon] ; Nuoendagula [Japon] ; S. Ishikawa [Japon] ; T. Umezawa [Japon] ; T. Taniguchi [Japon] ; S. Kajita [Japon]Source :
- Plant biology (Stuttgart, Germany) [ 1438-8677 ] ; 2019.
Descripteurs français
- KwdFr :
- Chromosomes de plante (génétique), Complexes multienzymatiques (métabolisme), Duplication de gène (génétique), Glucosyltransferases (métabolisme), Gènes de plante (génétique), Phylogenèse (MeSH), Populus (enzymologie), Populus (génétique), Populus (métabolisme), RT-PCR (MeSH), Régions promotrices (génétique) (génétique), Régulation de l'expression des gènes végétaux (génétique), Synténie (génétique), Transcriptome (MeSH), Végétaux génétiquement modifiés (MeSH).
- MESH :
- enzymologie : Populus.
- génétique : Chromosomes de plante, Duplication de gène, Gènes de plante, Populus, Régions promotrices (génétique), Régulation de l'expression des gènes végétaux, Synténie.
- métabolisme : Complexes multienzymatiques, Glucosyltransferases, Populus.
- Phylogenèse, RT-PCR, Transcriptome, Végétaux génétiquement modifiés.
English descriptors
- KwdEn :
- Chromosomes, Plant (genetics), Gene Duplication (genetics), Gene Expression Regulation, Plant (genetics), Genes, Plant (genetics), Glucosyltransferases (metabolism), Multienzyme Complexes (metabolism), Phylogeny (MeSH), Plants, Genetically Modified (MeSH), Populus (enzymology), Populus (genetics), Populus (metabolism), Promoter Regions, Genetic (genetics), Reverse Transcriptase Polymerase Chain Reaction (MeSH), Synteny (genetics), Transcriptome (MeSH).
- MESH :
- chemical , metabolism : Glucosyltransferases, Multienzyme Complexes.
- enzymology : Populus.
- genetics : Chromosomes, Plant, Gene Duplication, Gene Expression Regulation, Plant, Genes, Plant, Populus, Promoter Regions, Genetic, Synteny.
- metabolism : Populus.
- Phylogeny, Plants, Genetically Modified, Reverse Transcriptase Polymerase Chain Reaction, Transcriptome.
Abstract
Gene duplication in plants occurs via several different mechanisms, including whole genome duplication, and the copied genes acquire various forms and types. The cellulose synthase (CesA) family functions in cellulose synthesis complex (CSC) formation, which is involved in the synthesis of primary and secondary cell walls in plants. In the genome of Populus, 17 CesA have been annotated, and some of them appeared through whole genome duplication. The nucleotide sequence of the duplicated genes changed during subsequent evolution, and functional differentiation of genes might have occurred. To gain insight into the evolutionary fate of the duplicated CesA, expression analysis with quantitative reverse transcription polymerase chain reactions and promoter-reporter assays was performed on three duplicated gene pairs whose products have been reported to form a single CSC. Changes in expression of each gene at different developmental stages were detected and divergent expression patterns in different organs and tissues observed between the gene pairs. Among the tested genes, expression of PttCesA3-C was apparently lower than that of its counterpart, PttCesA3-D. The results suggest that the six CesA are approaching sub-functionalisation or non-functionalisation. Furthermore, the level of functionalisation may vary among the three pairs of genes, and functional specialisation of each CesA should have been achieved, at least partially, through differences in expression of genes.
DOI: 10.1111/plb.12921
PubMed: 30315721
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Osako</name><affiliation wicri:level="3"><nlm:affiliation>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Takata, N" sort="Takata, N" uniqKey="Takata N" first="N" last="Takata">N. Takata</name><affiliation wicri:level="1"><nlm:affiliation>Forest Bio-Research Center, Forestry and Forest Products Research Institute, Ibaraki, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Forest Bio-Research Center, Forestry and Forest Products Research Institute, Ibaraki</wicri:regionArea><wicri:noRegion>Ibaraki</wicri:noRegion></affiliation></author><author><name sortKey="Nuoendagula" sort="Nuoendagula" uniqKey="Nuoendagula" last="Nuoendagula">Nuoendagula</name><affiliation wicri:level="3"><nlm:affiliation>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Ishikawa, S" sort="Ishikawa, S" uniqKey="Ishikawa S" first="S" last="Ishikawa">S. 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Umezawa</name><affiliation wicri:level="3"><nlm:affiliation>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Taniguchi, T" sort="Taniguchi, T" uniqKey="Taniguchi T" first="T" last="Taniguchi">T. Taniguchi</name><affiliation wicri:level="1"><nlm:affiliation>Forest Bio-Research Center, Forestry and Forest Products Research Institute, Ibaraki, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Forest Bio-Research Center, Forestry and Forest Products Research Institute, Ibaraki</wicri:regionArea><wicri:noRegion>Ibaraki</wicri:noRegion></affiliation></author><author><name sortKey="Kajita, S" sort="Kajita, S" uniqKey="Kajita S" first="S" last="Kajita">S. Kajita</name><affiliation wicri:level="3"><nlm:affiliation>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author></analytic><series><title level="j">Plant biology (Stuttgart, Germany)</title><idno type="eISSN">1438-8677</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chromosomes, Plant (genetics)</term><term>Gene Duplication (genetics)</term><term>Gene Expression Regulation, Plant (genetics)</term><term>Genes, Plant (genetics)</term><term>Glucosyltransferases (metabolism)</term><term>Multienzyme Complexes (metabolism)</term><term>Phylogeny (MeSH)</term><term>Plants, Genetically Modified (MeSH)</term><term>Populus (enzymology)</term><term>Populus (genetics)</term><term>Populus (metabolism)</term><term>Promoter Regions, Genetic (genetics)</term><term>Reverse Transcriptase Polymerase Chain Reaction (MeSH)</term><term>Synteny (genetics)</term><term>Transcriptome (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Chromosomes de plante (génétique)</term><term>Complexes multienzymatiques (métabolisme)</term><term>Duplication de gène (génétique)</term><term>Glucosyltransferases (métabolisme)</term><term>Gènes de plante (génétique)</term><term>Phylogenèse (MeSH)</term><term>Populus (enzymologie)</term><term>Populus (génétique)</term><term>Populus (métabolisme)</term><term>RT-PCR (MeSH)</term><term>Régions promotrices (génétique) (génétique)</term><term>Régulation de l'expression des gènes végétaux (génétique)</term><term>Synténie (génétique)</term><term>Transcriptome (MeSH)</term><term>Végétaux génétiquement modifiés (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Glucosyltransferases</term><term>Multienzyme Complexes</term></keywords><keywords scheme="MESH" qualifier="enzymologie" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="enzymology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Chromosomes, Plant</term><term>Gene Duplication</term><term>Gene Expression Regulation, Plant</term><term>Genes, Plant</term><term>Populus</term><term>Promoter Regions, Genetic</term><term>Synteny</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Chromosomes de plante</term><term>Duplication de gène</term><term>Gènes de plante</term><term>Populus</term><term>Régions promotrices (génétique)</term><term>Régulation de l'expression des gènes végétaux</term><term>Synténie</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Complexes multienzymatiques</term><term>Glucosyltransferases</term><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Phylogeny</term><term>Plants, Genetically Modified</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Transcriptome</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Phylogenèse</term><term>RT-PCR</term><term>Transcriptome</term><term>Végétaux génétiquement modifiés</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Gene duplication in plants occurs via several different mechanisms, including whole genome duplication, and the copied genes acquire various forms and types. The cellulose synthase (CesA) family functions in cellulose synthesis complex (CSC) formation, which is involved in the synthesis of primary and secondary cell walls in plants. In the genome of Populus, 17 CesA have been annotated, and some of them appeared through whole genome duplication. The nucleotide sequence of the duplicated genes changed during subsequent evolution, and functional differentiation of genes might have occurred. To gain insight into the evolutionary fate of the duplicated CesA, expression analysis with quantitative reverse transcription polymerase chain reactions and promoter-reporter assays was performed on three duplicated gene pairs whose products have been reported to form a single CSC. Changes in expression of each gene at different developmental stages were detected and divergent expression patterns in different organs and tissues observed between the gene pairs. Among the tested genes, expression of PttCesA3-C was apparently lower than that of its counterpart, PttCesA3-D. The results suggest that the six CesA are approaching sub-functionalisation or non-functionalisation. Furthermore, the level of functionalisation may vary among the three pairs of genes, and functional specialisation of each CesA should have been achieved, at least partially, through differences in expression of genes.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">30315721</PMID><DateCompleted><Year>2019</Year><Month>02</Month><Day>21</Day></DateCompleted><DateRevised><Year>2019</Year><Month>02</Month><Day>21</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1438-8677</ISSN><JournalIssue CitedMedium="Internet"><Volume>21</Volume><Issue>2</Issue><PubDate><Year>2019</Year><Month>Mar</Month></PubDate></JournalIssue><Title>Plant biology (Stuttgart, Germany)</Title><ISOAbbreviation>Plant Biol (Stuttg)</ISOAbbreviation></Journal><ArticleTitle>Expression analysis of cellulose synthases that comprise the Type II complex in hybrid aspen.</ArticleTitle><Pagination><MedlinePgn>361-370</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/plb.12921</ELocationID><Abstract><AbstractText>Gene duplication in plants occurs via several different mechanisms, including whole genome duplication, and the copied genes acquire various forms and types. The cellulose synthase (CesA) family functions in cellulose synthesis complex (CSC) formation, which is involved in the synthesis of primary and secondary cell walls in plants. In the genome of Populus, 17 CesA have been annotated, and some of them appeared through whole genome duplication. The nucleotide sequence of the duplicated genes changed during subsequent evolution, and functional differentiation of genes might have occurred. To gain insight into the evolutionary fate of the duplicated CesA, expression analysis with quantitative reverse transcription polymerase chain reactions and promoter-reporter assays was performed on three duplicated gene pairs whose products have been reported to form a single CSC. Changes in expression of each gene at different developmental stages were detected and divergent expression patterns in different organs and tissues observed between the gene pairs. Among the tested genes, expression of PttCesA3-C was apparently lower than that of its counterpart, PttCesA3-D. The results suggest that the six CesA are approaching sub-functionalisation or non-functionalisation. Furthermore, the level of functionalisation may vary among the three pairs of genes, and functional specialisation of each CesA should have been achieved, at least partially, through differences in expression of genes.</AbstractText><CopyrightInformation>© 2018 German Society for Plant Sciences and The Royal Botanical Society of the Netherlands.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Osako</LastName><ForeName>Y</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Takata</LastName><ForeName>N</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Forest Bio-Research Center, Forestry and Forest Products Research Institute, Ibaraki, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nuoendagula</LastName><AffiliationInfo><Affiliation>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ishikawa</LastName><ForeName>S</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Umezawa</LastName><ForeName>T</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Taniguchi</LastName><ForeName>T</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Forest Bio-Research Center, Forestry and Forest Products Research Institute, Ibaraki, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kajita</LastName><ForeName>S</ForeName><Initials>S</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-7187-6059</Identifier><AffiliationInfo><Affiliation>Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, Tokyo, Japan.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>JPMJAL1107</GrantID><Agency>Advanced Low Carbon Technology Research and Development Program</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2018</Year><Month>11</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Plant Biol (Stuttg)</MedlineTA><NlmUniqueID>101148926</NlmUniqueID><ISSNLinking>1435-8603</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D009097">Multienzyme Complexes</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 2.4.1.-</RegistryNumber><NameOfSubstance UI="D005964">Glucosyltransferases</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 2.4.1.29</RegistryNumber><NameOfSubstance UI="C063760">cellulose synthase (GDP-forming)</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020440" MajorTopicYN="N">Gene Duplication</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005964" MajorTopicYN="N">Glucosyltransferases</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009097" MajorTopicYN="N">Multienzyme Complexes</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D030821" MajorTopicYN="N">Plants, Genetically Modified</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000201" MajorTopicYN="Y">enzymology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011401" MajorTopicYN="N">Promoter Regions, Genetic</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D026801" MajorTopicYN="N">Synteny</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="N">Transcriptome</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Cell wall</Keyword><Keyword MajorTopicYN="N">gene duplication</Keyword><Keyword MajorTopicYN="N">whole genome duplication</Keyword><Keyword MajorTopicYN="N">β-glucuronidase assay</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>09</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2018</Year><Month>10</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2018</Year><Month>10</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>2</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2018</Year><Month>10</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30315721</ArticleId><ArticleId IdType="doi">10.1111/plb.12921</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Japon</li></country><region><li>Région de Kantō</li></region><settlement><li>Tokyo</li></settlement></list><tree><country name="Japon"><region name="Région de Kantō"><name sortKey="Osako, Y" sort="Osako, Y" uniqKey="Osako Y" first="Y" last="Osako">Y. Osako</name></region><name sortKey="Ishikawa, S" sort="Ishikawa, S" uniqKey="Ishikawa S" first="S" last="Ishikawa">S. Ishikawa</name><name sortKey="Kajita, S" sort="Kajita, S" uniqKey="Kajita S" first="S" last="Kajita">S. Kajita</name><name sortKey="Nuoendagula" sort="Nuoendagula" uniqKey="Nuoendagula" last="Nuoendagula">Nuoendagula</name><name sortKey="Takata, N" sort="Takata, N" uniqKey="Takata N" first="N" last="Takata">N. Takata</name><name sortKey="Taniguchi, T" sort="Taniguchi, T" uniqKey="Taniguchi T" first="T" last="Taniguchi">T. Taniguchi</name><name sortKey="Umezawa, T" sort="Umezawa, T" uniqKey="Umezawa T" first="T" last="Umezawa">T. Umezawa</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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